GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THCA | cis | rs12196860 | 1 | rs62412819 | chr6:55992889 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.05 | 6.7E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412820 | chr6:55992934 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.05 | 6.7E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62412822 | chr6:55993174 | COL21A1 | chr6:55921389-56258892:- | -0.65 | -8.05 | 6.7E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413465 | chr6:55998202 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.1 | 4.64E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413470 | chr6:55999537 | COL21A1 | chr6:55921389-56258892:- | -0.5 | -6.44 | 2.98E-10 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413472 | chr6:56000117 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.09 | 4.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413473 | chr6:56000463 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.09 | 4.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413474 | chr6:56001074 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.09 | 4.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413475 | chr6:56001075 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.09 | 4.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413476 | chr6:56001918 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.09 | 4.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413477 | chr6:56002434 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.09 | 4.8E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413478 | chr6:56002867 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.07 | 5.71E-15 | Psychosis (atypical) |
| THCA | cis | rs12196860 | 1 | rs62413479 | chr6:56004203 | COL21A1 | chr6:55921389-56258892:- | -0.66 | -8.13 | 3.85E-15 | Psychosis (atypical) |
| THCA | cis | rs515910 | 1 | rs624159 | chr10:105939451 | C10orf79 | chr10:105889647-105992120:- | 0.25 | 8 | 9.29E-15 | Attention deficit hyperactivity disorder |
| THCA | cis | rs300890 | 1 | rs624189 | chr4:144245363 | GAB1 | chr4:144257983-144395717:+ | -0.17 | -3.99 | 7.58E-5 | Nasopharyngeal carcinoma |